1NS6 image
Deposition Date 2003-01-27
Release Date 2003-10-14
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1NS6
Title:
The 2.1A Structure of Horse (alpha hemichrome/beta met) Hemoglobin at pH 5.4
Biological Source:
Source Organism:
Equus caballus (Taxon ID: 9796)
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemoglobin alpha subunit
Gene (Uniprot):HBA
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Equus caballus
Polymer Type:polypeptide(L)
Molecule:Hemoglobin beta subunit
Gene (Uniprot):HBB
Chain IDs:B
Chain Length:146
Number of Molecules:1
Biological Source:Equus caballus
Ligand Molecules
Primary Citation
A pH-Dependent Aquomet-to-Hemichrome Transition in Crystalline Horse Methemoglobin
Biochemistry 42 10113 10125 (2003)
PMID: 12939139 DOI: 10.1021/bi030059t

Abstact

In 1947, Perutz and co-workers reported that crystalline horse methemoglobin undergoes a large lattice transition as the pH is decreased from 7.1 to 5.4. We have determined the pH 7.1 and 5.4 crystal structures of horse methemoglobin at 1.6 and 2.1 A resolution, respectively, and find that this lattice transition involves a 23 A translation of adjacent hemoglobin tetramers as well as changes in alpha heme ligation and the tertiary structure of the alpha subunits. Specifically, when the pH is lowered from 7.1 to 5.4, the Fe(3+) alpha heme groups (but not the beta heme groups) are converted from the aquomet form, in which the proximal histidine [His87(F8)alpha] and a water molecule are the axial heme ligands, to the hemichrome (bishistidine) form, in which the proximal histidine and the distal histidine [His58(E7)alpha] are the axial heme ligands. Hemichrome formation is coupled to a large tertiary structure transition in the eight-residue segment Pro44(CD2)alpha-Gly51(D7)alpha that converts from an extended loop structure at pH 7.1 to a pi-like helix at pH 5.4. The formation of the pi helix forces Phe46(CD4)alpha out of the alpha heme pocket and into the interface between adjacent hemoglobin tetramers where it participates in crystal lattice contacts unique to the pH 5.4 structure. In addition, the transition from aquomet alpha subunits to bishistidine alpha subunits is accompanied by an approximately 1.2 A movement of the alpha heme groups to a more solvent-exposed position as well as the creation of a solvent channel from the interior of the alpha heme pocket to the outside of the tetramer. These changes and the extensive rearrangement of the crystal lattice structure allow the alpha heme group of one tetramer to make direct contact with an alpha heme group on an adjacent tetramer. These results suggest possible functional roles for hemichrome formation in vivo.

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