1NRG image
Deposition Date 2003-01-24
Release Date 2003-02-11
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1NRG
Keywords:
Title:
Structure and Properties of Recombinant Human Pyridoxine-5'-Phosphate Oxidase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:pyridoxine 5'-phosphate oxidase
Gene (Uniprot):PNPO
Chain IDs:A
Chain Length:261
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase.
Protein Sci. 12 1455 1463 (2003)
PMID: 12824491 DOI: 10.1110/ps.0356203

Abstact

Pyridoxine 5'-phosphate oxidase catalyzes the terminal step in the synthesis of pyridoxal 5'-phosphate. The cDNA for the human enzyme has been cloned and expressed in Escherichia coli. The purified human enzyme is a homodimer that exhibits a low catalytic rate constant of approximately 0.2 sec(-1) and K(m) values in the low micromolar range for both pyridoxine 5'phosphate and pyridoxamine 5'-phosphate. Pyridoxal 5'-phosphate is an effective product inhibitor. The three-dimensional fold of the human enzyme is very similar to those of the E. coli and yeast enzymes. The human and E. coli enzymes share 39% sequence identity, but the binding sites for the tightly bound FMN and substrate are highly conserved. As observed with the E. coli enzyme, the human enzyme binds one molecule of pyridoxal 5'-phosphate tightly on each subunit.

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