1NKS image
Deposition Date 1998-07-16
Release Date 1998-12-09
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1NKS
Keywords:
Title:
ADENYLATE KINASE FROM SULFOLOBUS ACIDOCALDARIUS
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.21
R-Value Work:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ADENYLATE KINASE
Gene (Uniprot):adkA
Chain IDs:A, B, C, D, E, F
Chain Length:194
Number of Molecules:6
Biological Source:Sulfolobus acidocaldarius
Primary Citation
The structure of a trimeric archaeal adenylate kinase.
J.Mol.Biol. 282 167 179 (1998)
PMID: 9733648 DOI: 10.1006/jmbi.1998.2003

Abstact

The adenylate kinase from the hyperthermophilic archaean species Sulfolobus acidocaldarius has been cloned, expressed in Escherichia coli, purified and crystallized. The crystal structure was elucidated by multiple isomorphous replacement and non-crystallographic density averaging. The structure was refined at 2.6 A (1 A=0.1 nm) resolution. The enzyme is trimeric, in contrast to previous solution measurements that suggested a dimeric structure, and in contrast to the vast majority of adenylate kinases, which are monomeric. In large parts of each subunit the chain fold resembles the known enzyme structure from eubacteria and eukaryotes although the sequence homology is negligible. Since the asymmetric unit contains two trimers with and without bound AMP at the AMP sites and with an ADP at one of the six ATP sites, the analysis shows the enzyme in several states. The conformational differences between these states resemble those of other adenylate kinases. Because of sequence homology, the structure presented provides a good model for the methanococcal adenylate kinases.

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