1NGZ image
Deposition Date 2002-12-18
Release Date 2003-02-04
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1NGZ
Keywords:
Title:
Chimeric Germline Fab 7g12-apo
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Germline Metal Chelatase Catalytic Antibody, Light chain
Chain IDs:A
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Germline Metal Chelatase Catalytic Antibody, Heavy chain
Chain IDs:B
Chain Length:220
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Primary Citation
Structural evidence for substrate strain in antibody catalysis
Proc.Natl.Acad.Sci.USA 100 856 861 (2003)
PMID: 12552112 DOI: 10.1073/pnas.0235873100

Abstact

The crystal structure of the Michaelis complex between the Fab fragment of ferrochelatase antibody 7G12 and its substrate mesoporphyrin has been solved to 2.6-A resolution. The antibody-bound mesoporphyrin clearly adopts a nonplanar conformation and reveals that the antibody catalyzes the porphyrin metallation reaction by straining/distorting the bound substrate toward the transition-state configuration. The crystal structures of the Fab fragment of the germ-line precursor antibody to 7G12 and its complex with the hapten N-methylmesoporphyrin have also been solved. A comparison of these structures with the corresponding structures of the affinity-matured antibody 7G12 reveals the molecular mechanism by which the immune system evolves binding energy to catalyze this reaction.

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Primary Citation of related structures