1NB9 image
Deposition Date 2002-12-02
Release Date 2003-03-11
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1NB9
Keywords:
Title:
Crystal Structure of Riboflavin Kinase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:hypothetical protein FLJ11149
Gene (Uniprot):RFK
Chain IDs:A
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Crystal Structure of Human Riboflavin Kinase Reveals a Beta Barrel Fold and a Novel Active Site Arch
Structure 11 265 273 (2003)
PMID: 12623014 DOI: 10.1016/S0969-2126(03)00024-8

Abstact

Riboflavin kinase (RFK) is an essential enzyme catalyzing the phosphorylation of riboflavin (vitamin B(2)) to form FMN, an obligatory step in vitamin B(2) utilization and flavin cofactor synthesis. The structure of human RFK revealed a six-stranded antiparallel beta barrel core structurally similar to the riboflavin synthase/ferredoxin reductase FAD binding domain fold. The binding site of an intrinsically bound MgADP defines a novel nucleotide binding motif that encompasses a loop, a 3(10) helix, and a reverse turn followed by a short beta strand. This active site loop forms an arch with ATP and riboflavin binding at the opposite side and the phosphoryl transfer appears to occur through the hole underneath the arch. The invariant residues Asn36 and Glu86 are implicated in the catalysis.

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