1NA4 image
Deposition Date 2002-11-26
Release Date 2003-12-09
Last Version Date 2025-03-05
Entry Detail
PDB ID:
1NA4
Keywords:
Title:
The structure of immature Yellow Fever virus particle
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
25.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:major envelope protein E
Chain IDs:A, B, C
Chain Length:395
Number of Molecules:3
Biological Source:Yellow fever virus
Ligand Molecules
Primary Citation
Structures of immature flavivirus particles
EMBO J. 22 2604 2613 (2003)
PMID: 12773377 DOI: 10.1093/emboj/cdg270

Abstact

Structures of prM-containing dengue and yellow fever virus particles were determined to 16 and 25 A resolution, respectively, by cryoelectron microscopy and image reconstruction techniques. The closely similar structures show 60 icosahedrally organized trimeric spikes on the particle surface. Each spike consists of three prM:E heterodimers, where E is an envelope glycoprotein and prM is the precursor to the membrane protein M. The pre-peptide components of the prM proteins in each spike cover the fusion peptides at the distal ends of the E glycoproteins in a manner similar to the organization of the glycoproteins in the alphavirus spikes. Each heterodimer is associated with an E and a prM transmembrane density. These transmembrane densities represent either an EE or prMprM antiparallel coiled coil by which each protein spans the membrane twice, leaving the C-terminus of each protein on the exterior of the viral membrane, consistent with the predicted membrane-spanning domains of the unprocessed polyprotein.

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Primary Citation of related structures