1N69 image
Deposition Date 2002-11-08
Release Date 2003-01-07
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1N69
Title:
Crystal structure of human saposin B
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SAPOSIN B
Gene (Uniprot):PSAP
Chain IDs:A, B, C
Chain Length:81
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal Structure of saposin B reveals a dimeric shell for lipid binding
Proc.Natl.Acad.Sci.USA 100 38 43 (2003)
PMID: 12518053 DOI: 10.1073/pnas.0136947100

Abstact

Saposin B is a small, nonenzymatic glycosphingolipid activator protein required for the breakdown of cerebroside sulfates (sulfatides) within the lysosome. The protein can extract target lipids from membranes, forming soluble protein-lipid complexes that are recognized by arylsulfatase A. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity.

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Primary Citation of related structures