1N5A image
Entry Detail
PDB ID:
1N5A
Keywords:
Title:
Crystal structure of the Murine class I Major Histocompatibility Complex of H-2DB, B2-Microglobulin, and A 9-Residue immunodominant peptide epitope gp33 derived from LCMV
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2002-11-05
Release Date:
2003-01-07
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.27
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:H-2 class I histocompatibility antigen, D-B alpha chain
Chain IDs:A, D, G, J
Chain Length:276
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B, E, H, K
Chain Length:99
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:nonameric peptide, gp33 derived from lymphocytic choriomeningitis virus
Mutations:C9M
Chain IDs:C, F, I, L
Chain Length:9
Number of Molecules:4
Biological Source:
Primary Citation
A Structural Basis for LCMV Immune Evasion. Subversion of H-2D(b) and H-2K(b) Presentation of gp33 Revealed by Comparative Crystal Structure Analyses.
Immunity 17 757 768 (2002)
PMID: 12479822 DOI: 10.1016/S1074-7613(02)00478-8

Abstact

LCMV infection of H-2(b) mice generates a CD8(+) CTL response mainly directed toward three immunodominant epitopes. One of these, gp33, is presented by both H-2D(b) and H-2K(b) MHC class I molecules. The virus can escape immune recognition in the context of both these MHC class I molecules through single mutations of the peptide. In order to understand the underlying structural mechanism, we determined the crystal structures of both complexes. The structures reveal that the peptide is presented in two diametrically opposed manners by H-2D(b) and H-2K(b), with residues used as anchor positions in one MHC class I molecule interacting with the TCR in the other. Importantly, the peptide's N-terminal residue p1K protrudes from the binding cleft in H-2K(b). We present structural evidence that explains the functional consequences of single mutations found in escape variants.

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Primary Citation of related structures