1N4N image
Deposition Date 2002-11-01
Release Date 2003-11-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1N4N
Keywords:
Title:
Structure of the Plant Defensin PhD1 from Petunia Hybrida
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations,structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:floral defensin-like protein 1
Gene (Uniprot):D1
Chain IDs:A
Chain Length:47
Number of Molecules:1
Biological Source:Petunia x hybrida
Ligand Molecules
Primary Citation
Structure of Petunia hybrida defensin 1, a novel plant defensin with five disulfide bonds
Biochemistry 42 8214 8222 (2003)
PMID: 12846570 DOI: 10.1021/bi034379o

Abstact

The structure of a novel plant defensin isolated from the flowers of Petunia hybrida has been determined by (1)H NMR spectroscopy. P. hybrida defensin 1 (PhD1) is a basic, cysteine-rich, antifungal protein of 47 residues and is the first example of a new subclass of plant defensins with five disulfide bonds whose structure has been determined. PhD1 has the fold of the cysteine-stabilized alphabeta motif, consisting of an alpha-helix and a triple-stranded antiparallel beta-sheet, except that it contains a fifth disulfide bond from the first loop to the alpha-helix. The additional disulfide bond is accommodated in PhD1 without any alteration of its tertiary structure with respect to other plant defensins. Comparison of its structure with those of classic, four-disulfide defensins has allowed us to identify a previously unrecognized hydrogen bond network that is integral to structure stabilization in the family.

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Primary Citation of related structures