1N47 image
Deposition Date 2002-10-30
Release Date 2003-02-25
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1N47
Title:
Isolectin B4 from Vicia villosa in complex with the Tn antigen
Biological Source:
Source Organism:
Vicia villosa (Taxon ID: 3911)
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 43
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isolectin B4
Chain IDs:A, B, C, D
Chain Length:233
Number of Molecules:4
Biological Source:Vicia villosa
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
The crystal structure of a plant lectin in complex with the Tn antigen
FEBS Lett. 536 106 110 (2003)
PMID: 12586347 DOI: 10.1016/S0014-5793(03)00037-1

Abstact

The structure of the tetrameric Vicia villosa isolectin B4 (VVLB4) in complex with a cancer antigen, the Tn glycopeptide (GalNAc-O-Ser), was determined at 2.7 A resolution. The N-acetylgalactoside moiety of the ligand binds to the primary combining site of VVLB4 in a similar way as observed for other Gal/GalNAc-specific plant lectins. The amino acid moiety of the Tn antigen is largely exposed to the solvent and makes few contacts with the protein. The structure of the complex provides a framework to understand the differences in the strength of VVLB4 binding to different sugars and emphasizes the role of a single protein residue, Tyr127, as a structural determinant of Tn-binding specificity.

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Primary Citation of related structures