ISDA

Entry Detail

PDB ID:

1MSE

Keywords:

DNA BINDING PROTEIN/DNA

Title:

SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES

Biological Source:

Source Organism:

Mus musculus,

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

1995-01-24

Release Date:

1995-03-31

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Calculated:

Conformers Submitted:

Selection Criteria:

structures with the least restraint violations,structures with the lowest energy

Download Validation Report

Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3')
Chain IDs:A
Chain Length:16
Number of Molecules:1
Biological Source:

Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3')
Chain IDs:B
Chain Length:16
Number of Molecules:1
Biological Source:

Protein Blast

Polymer Type:polypeptide(L)
Description:C-Myb DNA-Binding Domain
Chain IDs:C
Chain Length:105
Number of Molecules:1
Biological Source:Mus musculus

UniProt ID:P06876 Pfam ID:PF00249

Ligand Molecules

Primary Citation

Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices.

Ogata, K, Morikawa, S, Nakamura, H, Sekikawa, A, Inoue, T, Kanai, H, Sarai, A, Ishii, S, Nishimura, Y, Ogata, K, Hojo, H, Aimoto, S, Nakai, T, Nakamura, H, Sarai, A, Ishii, S, Nishimura, Y.Show

Cell(Cambridge,Mass.) 79 639 648 (1994)

PMID: 7954830 DOI: 10.1016/0092-8674(94)90549-5

Abstact

The DNA-binding region of Myb consists of three imperfect tandem repeats (R1, R2, and R3). We have determined the solution structure of a specific DNA complex of the minimum DNA-binding domain (R2R3) by heteronuclear multidimensional NMR. Both R2 and R3 contain three helices, and the third helix in each is found to be a recognition helix. R2 and R3 are closely packed in the major groove, so that the two recognition helices contact each other directly to bind to the specific base sequence, AACNG cooperatively; this is a significant arrangement of recognition helices. The three key base pairs in this sequence are specifically recognized by Asn-183 (R3), Lys-182 (R3), and Lys-128 (R2). In contrast, R1 has no specific interactions with DNA from our NMR study of the DNA complex of the full DNA-binding domain (R1R2R3).

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Primary Citation of related structures