1M26 image
Entry Detail
PDB ID:
1M26
Title:
Crystal structure of jacalin-T-antigen complex
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2002-06-21
Release Date:
2002-10-12
Method Details:
Experimental Method:
Resolution:
1.62 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Jacalin, alpha chain
Chain IDs:A, C, E, G
Chain Length:133
Number of Molecules:4
Biological Source:Artocarpus integer
Polymer Type:polypeptide(L)
Description:Jacalin, beta chain
Chain IDs:B, D, F, H
Chain Length:17
Number of Molecules:4
Biological Source:Artocarpus integer
Peptide-like Molecules
PRD_900084
Primary Citation
Crystal structure of the jacalin-T-antigen complex and a comparative study of lectin-T-antigen complexs
J.Mol.Biol. 321 637 645 (2002)
PMID: 12206779 DOI: 10.1016/S0022-2836(02)00674-5

Abstact

Thomsen-Friedenreich antigen (Galbeta1-3GalNAc), generally known as T-antigen, is expressed in more than 85% of human carcinomas. Therefore, proteins which specifically bind T-antigen have potential diagnostic value. Jacalin, a lectin from jack fruit (Artocarpus integrifolia) seeds, is a tetramer of molecular mass 66kDa. It is one of the very few proteins which are known to bind T-antigen. The crystal structure of the jacalin-T-antigen complex has been determined at 1.62A resolution. The interactions of the disaccharide at the binding site are predominantly through the GalNAc moiety, with Gal interacting only through water molecules. They include a hydrogen bond between the anomeric oxygen of GalNAc and the pi electrons of an aromatic side-chain. Several intermolecular interactions involving the bound carbohydrate contribute to the stability of the crystal structure. The present structure, along with that of the Me-alpha-Gal complex, provides a reasonable qualitative explanation for the known affinities of jacalin to different carbohydrate ligands and a plausible model of the binding of the lectin to T-antigen O-linked to seryl or threonyl residues. Including the present one, the structures of five lectin-T-antigen complexes are available. GalNAc occupies the primary binding site in three of them, while Gal occupies the site in two. The choice appears to be related to the ability of the lectin to bind sialylated sugars. In either case, most of the lectin-disaccharide interactions are at the primary binding site. The conformation of T-antigen in the five complexes is nearly the same.

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