1LOG image
Deposition Date 1994-01-27
Release Date 1994-04-30
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1LOG
Keywords:
Title:
X-RAY STRUCTURE OF A (ALPHA-MAN(1-3)BETA-MAN(1-4)GLCNAC)-LECTIN COMPLEX AT 2.1 ANGSTROMS RESOLUTION
Biological Source:
Source Organism:
Lathyrus ochrus (Taxon ID: 3858)
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LEGUME ISOLECTIN I (ALPHA CHAIN)
Chain IDs:A, C
Chain Length:181
Number of Molecules:2
Biological Source:Lathyrus ochrus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LEGUME ISOLECTIN I (BETA CHAIN)
Chain IDs:B, D
Chain Length:52
Number of Molecules:2
Biological Source:Lathyrus ochrus
Primary Citation
X-ray structure of a (alpha-Man(1-3)beta-Man(1-4)GlcNAc)-lectin complex at 2.1-A resolution. The role of water in sugar-lectin interaction.
J.Biol.Chem. 265 18161 18165 (1990)
PMID: 2211692

Abstact

We describe herein the high resolution refined x-ray structure of a trisaccharide, which is a part of the N-acetyllactosamine type glycan found in the majority of the N-glycosyl-proteins, complexed to the isolectin I. According to the potentials used by Imberty et al. (Imburty, A., Gerber, S., Tran, V., and Pérez, S. (1990) Glycoconjugate J. 7, 27-54) the trisaccharide is in a low-energy state. Only one mannose moiety establishes direct hydrogen bonds with the lectin, as it is the case for monosaccharide-lectin complexes. The comparison of our trisaccharide with the one determined in solution by Warin et al. (Warin, V., Baert, F., Fouret, R., Strecker, G., Fournet, B., and Montreuil, J. (1979) Carbohydr. Res. 76, 11-22) shows that both adopt roughly the same conformation. The differences in these two sugar structures allow us to assign the role of water molecules present in the vicinity of our trisaccharide for the stabilization of this sugar-lectin complex.

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