1LM8 image
Deposition Date 2002-04-30
Release Date 2002-06-12
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1LM8
Keywords:
Title:
Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.23
R-Value Work:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ELONGIN B
Gene (Uniprot):ELOB
Chain IDs:A (auth: B)
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:ELONGIN C
Gene (Uniprot):ELOC
Chain IDs:B (auth: C)
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Hypoxia-inducible factor 1 alpha
Gene (Uniprot):HIF1A
Chain IDs:D (auth: H)
Chain Length:20
Number of Molecules:1
Biological Source:
Polymer Type:polypeptide(L)
Molecule:Von Hippel-Lindau disease tumor suppressor
Gene (Uniprot):VHL
Chain IDs:C (auth: V)
Chain Length:160
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HYP D PRO 4-HYDROXYPROLINE
Primary Citation
Structure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling.
Science 296 1886 1889 (2002)
PMID: 12004076 DOI: 10.1126/science.1073440

Abstact

The ubiquitination of the hypoxia-inducible factor (HIF) by the von Hippel-Lindau tumor suppressor (pVHL) plays a central role in the cellular response to changes in oxygen availability. pVHL binds to HIF only when a conserved proline in HIF is hydroxylated, a modification that is oxygen-dependent. The 1.85 angstrom structure of a 20-residue HIF-1alpha peptide-pVHL-ElonginB-ElonginC complex shows that HIF-1alpha binds to pVHL in an extended beta strand-like conformation. The hydroxyproline inserts into a gap in the pVHL hydrophobic core, at a site that is a hotspot for tumorigenic mutations, with its 4-hydroxyl group recognized by buried serine and histidine residues. Although the beta sheet-like interactions contribute to the stability of the complex, the hydroxyproline contacts are central to the strict specificity characteristic of signaling.

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Primary Citation of related structures