1LA6 image
Deposition Date 2002-03-28
Release Date 2002-07-31
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1LA6
Title:
The crystal structure of Trematomus newnesi hemoglobin in a partial hemichrome state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemoglobin alpha-1 chain
Gene (Uniprot):hba1
Chain IDs:A
Chain Length:143
Number of Molecules:1
Biological Source:Trematomus newnesi
Polymer Type:polypeptide(L)
Molecule:Hemoglobin beta-1/2 chain
Chain IDs:B
Chain Length:146
Number of Molecules:1
Biological Source:Trematomus newnesi
Primary Citation
The crystal structure of a tetrameric hemoglobin in a partial hemichrome state
Proc.Natl.Acad.Sci.USA 99 9801 9806 (2002)
PMID: 12093902 DOI: 10.1073/pnas.132182099

Abstact

Tetrameric hemoglobins are the most widely used systems in studying protein cooperativity. Allosteric effects in hemoglobins arise from the switch between a relaxed (R) state and a tense (T) state occurring upon oxygen release. Here we report the 2.0-A crystal structure of the main hemoglobin component of the Antarctic fish Trematomus newnesi, in a partial hemichrome form. The two alpha-subunit iron atoms are bound to a CO molecule, whereas in the beta subunits the distal histidine residue is the sixth ligand of the heme iron. This structure, a tetrameric hemoglobin in the hemichrome state, demonstrates that the iron coordination by the distal histidine, usually associated with denaturing states, may be tolerated in a native-like hemoglobin structure. In addition, several features of the tertiary and quaternary organization of this structure are intermediate between the R and T states and agree well with the R --> T transition state properties obtained by spectroscopic and kinetic techniques. The analysis of this structure provides a detailed pathway of heme-heme communication and it indicates that the plasticity of the beta heme pocket plays a role in the R --> T transition of tetrameric hemoglobins.

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