1L5A image
Deposition Date 2002-03-06
Release Date 2002-06-26
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1L5A
Title:
Crystal Structure of VibH, an NRPS Condensation Enzyme
Biological Source:
Source Organism:
Vibrio cholerae (Taxon ID: 666)
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.25
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:amide synthase
Gene (Uniprot):VC_0775
Chain IDs:A, B, C
Chain Length:436
Number of Molecules:3
Biological Source:Vibrio cholerae
Primary Citation
The structure of VibH represents nonribosomal peptide synthetase condensation, cyclization and epimerization domains.
Nat.Struct.Biol. 9 522 526 (2002)
PMID: 12055621

Abstact

Nonribosomal peptide synthetases (NRPSs) are large, multidomain enzymes that biosynthesize medically important natural products. We report the crystal structure of the free-standing NRPS condensation (C) domain VibH, which catalyzes amide bond formation in the synthesis of vibriobactin, a Vibrio cholerae siderophore. Despite low sequence identity, NRPS condensation enzymes are structurally related to chloramphenicol acetyltransferase (CAT) and dihydrolipoamide acyltransferases. However, although the latter enzymes are homotrimers, VibH is a monomeric pseudodimer. The VibH structure is representative of both NRPS condensation and epimerization domains, as well as the condensation-variant cyclization domains, which are all expected to be monomers. Surprisingly, despite favorable positioning in the active site, a universally conserved histidine important in CAT and in other C domains is not critical for general base catalysis in VibH.

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Primary Citation of related structures
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