1L3Y image
Deposition Date 2002-03-03
Release Date 2002-04-01
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1L3Y
Keywords:
Title:
INTEGRIN EGF-LIKE MODULE 3 FROM THE BETA-2 SUBUNIT
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
15
Selection Criteria:
structures with acceptable covalent geometry,structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrin beta-2:CYSTEINE-RICH MODULE 3
Gene (Uniprot):ITGB2
Chain IDs:A
Chain Length:41
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cysteine-rich module structure reveals a fulcrum for integrin rearrangement upon activation.
Nat.Struct.Biol. 9 282 287 (2002)
PMID: 11896403 DOI: 10.1038/nsb779

Abstact

Cysteine-rich repeats in the integrin beta subunit stalk region relay activation signals to the ligand-binding headpiece. The NMR solution structure and disulfide bond connectivity of Cys-rich module-3 of the integrin beta2 subunit reveal a nosecone-shaped variant of the EGF fold, termed an integrin-EGF (I-EGF) domain. Interdomain contacts between I-EGF domains 2 and 3 observed by NMR support a model in which the modules are related by an approximate two-fold screw axis in an extended arrangement. Our findings complement a 3.1 A crystal structure of the extracellular portion of integrin alphaVbeta3, which lacks an atomic model for I-EGF2 and a portion of I-EGF3. The disulfide connectivity of I-EGF3 chemically assigned here differs from the pairings suggested in the alphaVbeta3 structure. Epitopes that become exposed upon integrin activation and residues that restrain activation are defined in beta2 I-EGF domains 2 and 3. Superposition on the alphaVbeta3 structure reveals that they are buried. This observation suggests that the highly bent alphaVbeta3 structure represents the inactive conformation and that release of contacts with I-EGF modules 2 and 3 triggers a switchblade-like opening motion extending the integrin into its active conformation.

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Primary Citation of related structures