1L3X image
Deposition Date 2002-03-01
Release Date 2003-12-23
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1L3X
Keywords:
Title:
Solution Structure of Novel Disintegrin Salmosin
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
90
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:platelet aggregation inhibitor disintegrin
Chain IDs:A
Chain Length:73
Number of Molecules:1
Biological Source:Gloydius blomhoffi brevicaudus
Ligand Molecules
Primary Citation
Solution structure of a novel disintegrin, salmosin, from Agkistrondon halys venom
Biochemistry 42 14408 14415 (2003)
PMID: 14661951 DOI: 10.1021/bi0300276

Abstact

Disintegrins are potent inhibitors of both platelet aggregation and integrin-dependent cell adhesion. A new disintegrin, salmosin, isolated from the venom of the Korean snake Agkistrodon halys brevicaudus, has been characterized by mass spectrometry and NMR spectroscopy, and its in vitro biological activity has been assessed. The IC(50) value of the purified salmosin was determined to be 2.2 nM in an assay for the inhibition of glycoprotein IIb-IIIa/fibrinogen interaction. Salmosin also inhibited the bovine capillary endothelial cell proliferation induced by bFGF in a dose-dependent manner. The NMR solution structures were well converged with a root-mean-square deviation of 0.76 A for backbone atoms among the 20 lowest energy structures, except for the arginylglycylaspartic acid (RGD) loop. The structure revealed that the conserved RGD motif with an unusual finger shape is distal from the rigid core of the C-terminal domain. Furthermore, even though the RGD motif did not interact with the hydrophobic core of the protein, it was stabilized by a network of molecular contacts through a small antiparallel beta-sheet comprising residues of Ile46-Ala50 and Asp54-Tyr58. Last, the electrostatic charge distribution on the surface of salmosin differs dramatically from that of other disintegrin proteins in that there is a cluster of negatively charged residues in close proximity to the RGD loop.

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Primary Citation of related structures