1KZS image
Deposition Date 2002-02-08
Release Date 2002-08-28
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1KZS
Keywords:
Title:
Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in Aqueous TFE Solution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
97
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations, structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vpr PROTEIN
Gene (Uniprot):vpr
Chain IDs:A
Chain Length:20
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in micelle containing aqueous solution.
Eur.J.Biochem. 269 3264 3269 (2002)
PMID: 12084067 DOI: 10.1046/j.1432-1033.2002.03005.x

Abstact

Human immunodeficiency virus type 1 protein R (HIV-1 Vpr) promotes nuclear entry of viral nucleic acids in nondividing cells, causes G(2) cell cycle arrest and is involved in cellular differentiation and cell death. Vpr subcellular localization is as variable as its functions. It is known, that consistent with its role in nuclear transport, Vpr localizes to the nuclear envelope of human cells. Further, a reported ion channel activity of Vpr is clearly dependent on its localization in or at membranes. We focused our structural studies on the secondary structure of a peptide consisting of residues 34-51 of HIV-1 Vpr. This part of Vpr plays an important role in Vpr oligomerization, contributes to cell cycle arrest activity, and is essential for virion incorporation and binding to HHR23A, a protein involved in DNA repair. Employing NMR spectroscopy we found this part of Vpr to be almost completely alpha helical in the presence of micelles, as well as in trifluoroethanol containing and methanol/chloroform solvent. Our results provide structural data suggesting residues 34-51 of Vpr to contain an amphipathic, leucine-zipper-like alpha helix, which serves as a basis for oligomerization of Vpr and its interactions with cellular and viral factors involved in subcellular localization and virion incorporation of Vpr.

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