1KXR image
Deposition Date 2002-02-01
Release Date 2002-03-20
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1KXR
Keywords:
Title:
Crystal Structure of Calcium-Bound Protease Core of Calpain I
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.07 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:thiol protease DOMAINS I AND II
Gene (Uniprot):Capn1
Mutations:C115S
Chain IDs:A, B
Chain Length:339
Number of Molecules:2
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
A Ca(2+) switch aligns the active site of calpain.
Cell(Cambridge,Mass.) 108 649 660 (2002)
PMID: 11893336 DOI: 10.1016/S0092-8674(02)00659-1

Abstact

Ca(2+) signaling by calpains leads to controlled proteolysis during processes ranging from cytoskeleton remodeling in mammals to sex determination in nematodes. Deregulated Ca(2+) levels result in aberrant proteolysis by calpains, which contributes to tissue damage in heart and brain ischemias as well as neurodegeneration in Alzheimer's disease. Here we show that activation of the protease core of mu calpain requires cooperative binding of two Ca(2+) atoms at two non-EF-hand sites revealed in the 2.1 A crystal structure. Conservation of the Ca(2+) binding residues defines an ancestral general mechanism of activation for most calpain isoforms, including some that lack EF-hand domains. The protease region is not affected by the endogenous inhibitor, calpastatin, and may contribute to calpain-mediated pathologies when the core is released by autoproteolysis.

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Primary Citation of related structures