1KSR image
Deposition Date 1997-02-07
Release Date 1997-08-20
Last Version Date 2024-05-22
Entry Detail
PDB ID:
1KSR
Title:
THE REPEATING SEGMENTS OF THE F-ACTIN CROSS-LINKING GELATION FACTOR (ABP-120) HAVE AN IMMUNOGLOBULIN FOLD, NMR, 20 STRUCTURES
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
45
Conformers Submitted:
20
Selection Criteria:
NUMBER (0) OF RESIDUAL CONSTRAINS VIOLATION (THRESHOLDS: 0.45 A FOR NOES AND 10.0 DEGREE FOR ANGLES)
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GELATION FACTOR
Gene (Uniprot):abpC
Chain IDs:A
Chain Length:100
Number of Molecules:1
Biological Source:Dictyostelium discoideum
Ligand Molecules
Primary Citation
The repeating segments of the F-actin cross-linking gelation factor (ABP-120) have an immunoglobulin-like fold.
Nat.Struct.Biol. 4 223 230 (1997)
PMID: 9164464 DOI: 10.1038/nsb0397-223

Abstact

The 120,000 M(r) gelation factor and alpha-actinin are among the most abundant F-actin cross-linking proteins in Dictyostelium discoideum. Both molecules are rod-shaped homodimers. Each monomer chain is comprised of an actin-binding domain and a rod domain. The rod domain of the gelation factor consists of six 100-residue repetitive segments with high internal homology. We have now determined the three-dimensional structure of segment 4 of the rod domain of the gelation factor from D. discoideum using NMR spectroscopy. The segment consists of seven beta-sheets arranged in an immunoglobulin-like (Ig) fold. This is completely different from the alpha-actinin rod domain which consists of four spectrin-like alpha-helical segments. The gelation factor is the first example of an Ig-fold found in an actin-binding protein. Two highly homologous actin-binding proteins from human with similar sequences to the gelation factor, filamin and a 280,000 M(r) actin-binding protein (ABP-280), share conserved residues that form the core of the gelation factor repetitive segment structure. Thus, the segment 4 structure should be common to this subfamily of the spectrin superfamily. The structure of segment 4 together with previously published electron microscopy data, provide an explanation for the dimerization of the whole gelation factor molecule.

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Primary Citation of related structures