1KP6 image
Deposition Date 1999-05-28
Release Date 1999-07-21
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1KP6
Keywords:
Title:
USTILAGO MAYDIS KILLER TOXIN KP6 ALPHA-SUBUNIT
Biological Source:
Source Organism:
Ustilago maydis (Taxon ID: 5270)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (TOXIN)
Chain IDs:A
Chain Length:79
Number of Molecules:1
Biological Source:Ustilago maydis
Ligand Molecules
Primary Citation
Structure of Ustilago maydis killer toxin KP6 alpha-subunit. A multimeric assembly with a central pore.
J.Biol.Chem. 274 20425 20431 (1999)
PMID: 10400668 DOI: 10.1074/jbc.274.29.20425

Abstact

Ustilago maydis is a fungal pathogen of maize, some strains of which secrete killer toxins. The toxins are encoded by double-stranded RNA viruses in the cell cytoplasm. The U. maydis killer toxin KP6 contains two polypeptide chains, alpha and beta, having 79 and 81 amino acids, respectively, both of which are necessary for its killer activity. The crystal structure of the alpha-subunit of KP6 (KP6alpha) has been determined at 1.80-A resolution. KP6alpha forms a single domain structure that has an overall shape of an ellipsoid with dimensions 40 A x 26 A x 21 A and belongs to the alpha/beta-sandwich family. The tertiary structure consists of a four-stranded antiparallel beta-sheet, a pair of antiparallel alpha-helices, a short strand along one edge of the sheet, and a short N-terminal helix. Although the fold is reminiscent of toxins of similar size, the topology of KP6alpha is distinctly different in that the alpha/beta-sandwich motif has two right-handed betaalphabeta split crossovers. Monomers of KP6alpha assemble through crystallographic symmetries, forming a hexamer with a central pore lined by hydrophobic N-terminal helices. The central pore could play an important role in the mechanism of the killing action of the toxin.

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Primary Citation of related structures