1KMZ image
Deposition Date 2001-12-17
Release Date 2002-07-19
Last Version Date 2023-08-16
Entry Detail
PDB ID:
1KMZ
Title:
MOLECULAR BASIS OF MITOMYCIN C RESICTANCE IN STREPTOMYCES: CRYSTAL STRUCTURES OF THE MRD PROTEIN WITH AND WITHOUT A DRUG DERIVATIVE
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.23
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:mitomycin-binding protein
Gene (Uniprot):mrd
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Streptomyces lavendulae
Primary Citation
Molecular basis of mitomycin C resistance in streptomyces: structure and function of the MRD protein.
Structure 10 933 942 (2002)
PMID: 12121648 DOI: 10.1016/S0969-2126(02)00778-5

Abstact

Mitomycin C (MC) is a potent anticancer agent. Streptomyces lavendulae, which produces MC, protects itself from the lethal effects of the drug by expressing several resistance proteins. One of them (MRD) binds MC and functions as a drug exporter. We report the crystal structure of MRD and its complex with an MC metabolite, 1,2-cis-1-hydroxy-2,7-diaminomitosene, at 1.5 A resolution. The drug is sandwiched by pi-stacking interactions of His-38 and Trp-108. MRD is a dimer. The betaalphabetabetabeta fold of the MRD molecule is reminiscent of methylmalonyl-CoA epimerase, bleomycin resistance proteins, glyoxalase I, and extradiol dioxygenases. The location of the binding site is identical to the ones in evolutionarily related enzymes, suggesting that the protein may have been recruited from a different metabolic pathway.

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