1KCN image
Deposition Date 2001-11-09
Release Date 2002-03-06
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1KCN
Keywords:
Title:
Structure of e109 Zeta Peptide, an Antagonist of the High-Affinity IgE Receptor
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with acceptable covalent geometry,structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:e109 zeta peptide
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Stable "zeta" peptides that act as potent antagonists of the high-affinity IgE receptor.
Proc.Natl.Acad.Sci.USA 99 1303 1308 (2002)
PMID: 11830661 DOI: 10.1073/pnas.022635599

Abstact

Recently we described a family of peptides, unrelated in sequence to IgE, that form stable beta-hairpins in solution and inhibit IgE activity in the microM range [Nakamura, G. R., Starovasnik, M. A., Reynolds, M. E. & Lowman, H. B. (2001) Biochemistry 40, 9828-9835]. Using an expanded set of peptide-phage libraries, we found a simpler motif, X(2)CPX(2)CYX, for binding to the high-affinity IgE receptor. In solution, one of these peptides spontaneously formed a covalent antiparallel dimer. We subsequently linked these monomers in a single-chain construct on phage and optimized receptor binding. Ultimately, peptides with 30 nM affinity were produced. NMR studies showed that the peptide adopts a stable fold consisting of two "zeta" (zeta)-shaped moieties. Structure-activity analyses reveal a single binding site created by the zeta-dimer, with two tyrosine residues important for structural stability and two proline residues important for Fc epsilon RI binding. The peptides inhibit histamine release from cultured cells and are extremely stable in biological fluids. The zeta peptides appear to act as competitive IgE inhibitors and suggest possibilities for design of novel IgE antagonists.

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