1KCG image
Deposition Date 2001-11-08
Release Date 2002-01-09
Last Version Date 2024-12-25
Entry Detail
PDB ID:
1KCG
Keywords:
Title:
NKG2D in complex with ULBP3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NKG2-D type II integral membrane protein
Gene (Uniprot):KLRK1
Chain IDs:A, B
Chain Length:124
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:UL16-binding protein 3
Gene (Uniprot):ULBP3
Chain IDs:C
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Conformational plasticity revealed by the cocrystal structure of NKG2D and its class I MHC-like ligand ULBP3.
Immunity 15 1039 1049 (2001)
PMID: 11754823 DOI: 10.1016/S1074-7613(01)00241-2

Abstact

NKG2D is known to trigger the natural killer (NK) cell lysis of various tumor and virally infected cells. In the NKG2D/ULBP3 complex, the structure of ULBP3 resembles the alpha1 and alpha2 domains of classical MHC molecules without a bound peptide. The lack of alpha3 and beta2m domains is compensated by replacing two hydrophobic patches at the underside of the class I MHC-like beta sheet floor with a group of hydrophilic and charged residues in ULBP3. NKG2D binds diagonally across the ULBP3 alpha helices, creating a complementary interface, an asymmetrical subunit orientation, and local conformational adjustments in the receptor. The interface is stabilized primarily by hydrogen bonds and hydrophobic interactions. Unlike the KIR receptors that recognize a conserved HLA region by a lock-and-key mechanism, NKG2D recognizes diverse ligands by an induced-fit mechanism.

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Primary Citation of related structures