1KBG image
Deposition Date 1998-08-28
Release Date 1999-02-09
Last Version Date 2023-11-15
Entry Detail
PDB ID:
1KBG
Keywords:
Title:
MHC Class I H-2KB Presented Glycopeptide RGY8-6H-GAL2
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB)
Gene (Uniprot):H2-K1
Chain IDs:A (auth: H)
Chain Length:274
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (BETA-2-MICROGLOBULIN)
Gene (Uniprot):B2m
Chain IDs:B (auth: L)
Chain Length:99
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2)
Gene (Uniprot):N
Chain IDs:C (auth: P)
Chain Length:8
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
ESC C MET 2-AMINO-4-ETHYL SULFANYL BUTYRIC ACID
Ligand Molecules
Primary Citation
Crystal structure of an MHC class I presented glycopeptide that generates carbohydrate-specific CTL.
Immunity 10 51 61 (1999)
PMID: 10023770 DOI: 10.1016/S1074-7613(00)80006-0

Abstact

T cell receptor (TCR) recognition of nonpeptidic and modified peptide antigens has been recently uncovered but is still poorly understood. Immunization with an H-2Kb-restricted glycopeptide RGY8-6H-Gal2 generates a population of cytotoxic T cells that express both alpha/beta TCR, specific for glycopeptide, and gamma/delta TCR, specific for the disaccharide, even on glycolipids. The crystal structure of Kb/RGY8-6H-Gal2 now demonstrates that the peptide and H-2Kb structures are unaffected by the peptide glycosylation, but the central region of the putative TCR binding site is dominated by the extensive exposure of the tethered carbohydrate. These features of the Kb/RGY8-6H-Gal2 structure are consistent with the individual ligand binding preferences identified for the alpha/beta and gamma/delta TCRs and thus explain the generation of a carbohydrate-specific T cell response.

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Primary Citation of related structures