1KAM image
Entry Detail
PDB ID:
1KAM
Keywords:
Title:
Structure of Bacillus subtilis Nicotinic Acid Mononucleotide Adenylyl Transferase
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2001-11-02
Release Date:
2002-07-12
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE
Chain IDs:A, B, C, D
Chain Length:194
Number of Molecules:4
Biological Source:Bacillus subtilis
Primary Citation
Identification, characterization, and crystal structure of Bacillus subtilis nicotinic acid mononucleotide adenylyltransferase.
J.Biol.Chem. 277 3698 3707 (2002)
PMID: 11704676 DOI: 10.1074/jbc.M109670200

Abstact

The nadD gene, encoding the enzyme nicotinic acid mononucleotide (NaMN) adenylyltransferase (AT), is essential for the synthesis of NAD and subsequent viability of the cell. The nadD gene in Bacillus subtilis (yqeJ) was identified by sequence homology with other bacterial nadD genes and by biochemical characterization of the gene product. NaMN AT catalyzes the reversible adenylation of both NaMN and the nicotinamide mononucleotide (NMN) but shows specificity for the nicotinate. In contrast to other known NMN ATs, biophysical characterizations reveal it to be a dimer. The NaMN AT crystal structure was determined for both the apo enzyme and product-bound form, to 2.1 and 3.2 A, respectively. The structures reveal a "functional" dimer conserved in both crystal forms and a monomer fold common to members of the nucleotidyl-transferase alpha/beta phosphodiesterase superfamily. A structural comparison with family members suggests a new conserved motif (SXXXX(R/K)) at the N terminus of an alpha-helix, which is not part of the shared fold. Interactions of the nicotinic acid with backbone atoms indicate the structural basis for specificity.

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