1K5W image
Deposition Date 2001-10-12
Release Date 2002-01-23
Last Version Date 2024-05-22
Entry Detail
PDB ID:
1K5W
Title:
THREE-DIMENSIONAL STRUCTURE OF THE SYNAPTOTAGMIN 1 C2B-DOMAIN: SYNAPTOTAGMIN 1 AS A PHOSPHOLIPID BINDING MACHINE
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
500
Conformers Submitted:
20
Selection Criteria:
STRUCTURES WITH THE MINIMUM NOE ENERGY
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Synaptotagmin I
Gene (Uniprot):Syt1
Chain IDs:A
Chain Length:152
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Three-dimensional structure of the synaptotagmin 1 C2B-domain: synaptotagmin 1 as a phospholipid binding machine.
Neuron 32 1057 1069 (2001)
PMID: 11754837 DOI: 10.1016/S0896-6273(01)00548-7

Abstact

Synaptotagmin 1 probably functions as a Ca2+ sensor in neurotransmitter release via its two C2-domains, but no common Ca2+-dependent activity that could underlie a cooperative action between them has been described. The NMR structure of the C2B-domain now reveals a beta sandwich that exhibits striking similarities and differences with the C2A-domain. Whereas the bottom face of the C2B-domain has two additional alpha helices that may be involved in specialized Ca2+-independent functions, the top face binds two Ca2+ ions and is remarkably similar to the C2A-domain. Consistent with these results, but in contrast to previous studies, we find that the C2B-domain binds phospholipids in a Ca2+-dependent manner similarly to the C2A-domain. These results suggest a novel view of synaptotagmin function whereby the two C2-domains cooperate in a common activity, Ca2+-dependent phospholipid binding, to trigger neurotransmitter release.

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Primary Citation of related structures