1JY6 image
Deposition Date 2001-09-11
Release Date 2002-06-12
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1JY6
Keywords:
Title:
B4DIMERA: A DE NOVO DESIGNED FOUR-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
400
Conformers Submitted:
19
Selection Criteria:
structures with the least restraint violations,structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:B4DIMER
Chain IDs:A, B
Chain Length:35
Number of Molecules:2
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DPR A PRO D-PROLINE
Ligand Molecules
Primary Citation
Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge.
J.Am.Chem.Soc. 124 4987 4994 (2002)
PMID: 11982362 DOI: 10.1021/ja0174276

Abstact

The design and characterization of an open eight-stranded beta-sheet in a synthetic, 2-fold symmetric 70-residue peptide is described. The design strategy involves the generation of a 35-residue four-stranded beta-sheet peptide in which successive hairpins are nucleated by appropriately positioned (D)Pro-Xxx sequences. Oxidative dimerization using a single Cys residue positioned at the center of the C-terminal strand results in a disulfide-bridged eight-stranded structure. Nuclear Overhauser effects firmly establish an eight-stranded beta-sheet in methanol. In water, the outer strands are frayed, but a well-defined four-stranded beta-sheet stabilized by a disulfide bridge and a hydrophobic cluster is determined from NMR data. Comparison of the precursor peptide with the disulfide-bridged dimer reveals considerable enhancement of beta-sheet content in the latter, suggesting that the disulfide cross-link is an effective strategy for the stabilization of beta-sheets.

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Primary Citation of related structures