1JV5 image
Deposition Date 2001-08-28
Release Date 2002-01-09
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1JV5
Title:
Anti-blood group A Fv
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ig kappa chain precursor V region
Gene (Uniprot):IGKV1-33
Chain IDs:A
Chain Length:107
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ig chain heavy chain precursor V region
Chain IDs:B
Chain Length:117
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of an anti-blood group A Fv and improvement of its binding affinity without loss of specificity.
J.Biol.Chem. 277 2059 2064 (2002)
PMID: 11679577 DOI: 10.1074/jbc.M104364200

Abstact

The specificity of antibody recognition of the ABO blood group trisaccharide antigens has been explored by crystal structure analysis and mutation methods. The crystal structure of the Fv corresponding to the anti-blood group A antibody AC1001 has been determined to 2.2-A resolution and reveals a binding pocket that is complementary to the blood group A-trisaccharide antigen. The effect of mutating specific residues lining this pocket on binding to the A and B blood group oligosaccharide antigens was investigated through a panel of single point mutations and through a phage library of mutations in complementarity determining region H3. Both approaches gave several mutants with improved affinity for antigen. Surface plasmon resonance indicated up to 8-fold enhancement in affinity for the A-pentasaccharide with no observable binding to the blood group B antigen. This is the first example of single point mutations in a carbohydrate-binding antibody resulting in significant increases in binding affinity without loss of specificity.

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Primary Citation of related structures