1JR3 image
Deposition Date 2001-08-10
Release Date 2001-09-26
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1JR3
Keywords:
Title:
Crystal Structure of the Processivity Clamp Loader Gamma Complex of E. coli DNA Polymerase III
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.30
R-Value Work:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA polymerase III subunit gamma
Gene (Uniprot):dnaX
Chain IDs:A, B, C
Chain Length:373
Number of Molecules:3
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:DNA polymerase III, delta subunit
Gene (Uniprot):holA
Chain IDs:D
Chain Length:343
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:DNA polymerase III, delta' subunit
Gene (Uniprot):holB
Chain IDs:E
Chain Length:334
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.) 106 429 441 (2001)
PMID: 11525729 DOI: 10.1016/S0092-8674(01)00463-9

Abstact

The gamma complex, an AAA+ ATPase, is the bacterial homolog of eukaryotic replication factor C (RFC) that loads the sliding clamp (beta, homologous to PCNA) onto DNA. The 2.7/3.0 A crystal structure of gamma complex reveals a pentameric arrangement of subunits, with stoichiometry delta':gamma(3):delta. The C-terminal domains of the subunits form a circular collar that supports an asymmetric arrangement of the N-terminal ATP binding domains of the gamma motor and the structurally related domains of the delta' stator and the delta wrench. The structure suggests a mechanism by which the gamma complex switches between a closed state, in which the beta-interacting element of delta is hidden by delta', and an open form similar to the crystal structure, in which delta is free to bind to beta.

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