1JL4 image
Deposition Date 2001-07-15
Release Date 2001-09-19
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1JL4
Keywords:
Title:
CRYSTAL STRUCTURE OF THE HUMAN CD4 N-TERMINAL TWO DOMAIN FRAGMENT COMPLEXED TO A CLASS II MHC MOLECULE
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Gallus gallus (Taxon ID: 9031)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.30 Å
R-Value Free:
0.45
R-Value Work:
0.42
R-Value Observed:
0.42
Space Group:
P 43 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K ALPHA CHAIN
Gene (Uniprot):H2-Aa
Chain IDs:A
Chain Length:178
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN
Gene (Uniprot):H2-Ab1
Chain IDs:B
Chain Length:185
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:OVOTRANSFERRIN
Chain IDs:C
Chain Length:16
Number of Molecules:1
Biological Source:Gallus gallus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-CELL SURFACE GLYCOPROTEIN CD4
Gene (Uniprot):CD4
Chain IDs:D
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structure of the human CD4 N-terminal two-domain fragment complexed to a class II MHC molecule.
Proc.Natl.Acad.Sci.USA 98 10799 10804 (2001)
PMID: 11535811 DOI: 10.1073/pnas.191124098

Abstact

The structural basis of the interaction between the CD4 coreceptor and a class II major histocompatibility complex (MHC) is described. The crystal structure of a complex containing the human CD4 N-terminal two-domain fragment and the murine I-A(k) class II MHC molecule with associated peptide (pMHCII) shows that only the "top corner" of the CD4 molecule directly contacts pMHCII. The CD4 Phe-43 side chain extends into a hydrophobic concavity formed by MHC residues from both alpha 2 and beta 2 domains. A ternary model of the CD4-pMHCII-T-cell receptor (TCR) reveals that the complex appears V-shaped with the membrane-proximal pMHCII at the apex. This configuration excludes a direct TCR-CD4 interaction and suggests how TCR and CD4 signaling is coordinated around the antigenic pMHCII complex. Human CD4 binds to HIV gp120 in a manner strikingly similar to the way in which CD4 interacts with pMHCII. Additional contacts between gp120 and CD4 give the CD4-gp120 complex a greater affinity. Thus, ligation of the viral envelope glycoprotein to CD4 occludes the pMHCII-binding site on CD4, contributing to immunodeficiency.

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Primary Citation of related structures