1JDM image
Entry Detail
PDB ID:
1JDM
Title:
NMR Structure of Sarcolipin
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2001-06-14
Release Date:
2002-02-13
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
16
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Sarcolipin
Chain IDs:A
Chain Length:31
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Structure and orientation of sarcolipin in lipid environments.
Biochemistry 41 475 482 (2002)
PMID: 11781085 DOI: 10.1021/bi011243m

Abstact

Sarcolipin (SLN) is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle. Here, we report the three-dimensional structure and topology of synthetic SLN in lipid environments, as determined by solution and solid-state NMR spectroscopy. 2D solution NMR experiments were performed on SLN solubilized in sodium dodecyl sulfate (SDS) micelles. We found that SLN adopts a highly defined alpha-helical conformation from F9 through R27, with a backbone RMSD of 0.65 A and a side chain RMSD of 1.66 A. The N-terminus (M1 through L8) and the C-terminus (S28 through Y31) are mostly unstructured. The orientation of the SLN was determined using one-dimensional (15)N NMR solid-state spectroscopy. The protein was incorporated into phospholipid bilayers prepared from a mixture of 1,2-dioleoyl-sn-glycero-3-phosphocholine and 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine. The (15)N chemical shift solid-state spectra from selectively labeled SLN samples indicate that SLN orients perpendicularly to the plane of the membrane bilayers. These results support the proposed mechanism of Ca-ATPase regulation of SLN via protein-protein intramembranous interactions between the highly conserved transmembrane domains of the Ca-ATPase and the conserved transmembrane domain of SLN.

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