1JB4 image
Deposition Date 2001-06-01
Release Date 2002-03-13
Last Version Date 2023-10-25
Entry Detail
PDB ID:
1JB4
Title:
CRYSTAL STRUCTURE OF NTF2 M102E MUTANT
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NUCLEAR TRANSPORT FACTOR 2
Gene (Uniprot):Nutf2
Mutations:M102E
Chain IDs:A, B
Chain Length:127
Number of Molecules:2
Biological Source:Rattus norvegicus
Primary Citation
NTF2 monomer-dimer equilibrium.
J.Mol.Biol. 314 465 477 (2001)
PMID: 11846560 DOI: 10.1006/jmbi.2001.5136

Abstact

Nuclear transport factor 2 (NTF2) mediates nuclear import of RanGDP, a central component of many nuclear trafficking pathways. NTF2 is a homodimer and each chain has independent binding sites for RanGDP and nuclear pore proteins (nucleoporins) that contain FxFG sequence repeats. We show here that the monomer-dimer dissociation constant for NTF2 obtained by sedimentation equilibrium ultracentrifugation is in the micromolar range, indicating that a substantial proportion of cellular NTF2 may be monomeric. To investigate the functional significance of NTF2 dimerization, we engineered a series of point mutations at the dimerization interface and one of these (M118E) remained monomeric below concentrations of 150 microM. CD spectra and X-ray crystallography showed that M118E-NTF2 preserved the wild-type NTF2 fold, although its thermal stability was 20 deg. C lower than that of the wild-type. M118E-NTF2 bound both RanGDP and FxFG nucleoporins less strongly, suggesting that dissociation of the NTF2 dimer could facilitate RanGDP release and thus nucleotide exchange after it had been transported into the nucleus. Moreover, colloidal gold coated with M118E-NTF2 showed reduced binding to Xenopus oocyte nuclear pores. Overall, our results indicate that dimer formation is important for NTF2 function and give insight into the formation of heterodimers by mRNA export factors such as TAP1 and NXT1 that contain NTF2-homology domains.

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