1J5E image
Deposition Date 2002-04-08
Release Date 2002-04-12
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1J5E
Keywords:
Title:
Structure of the Thermus thermophilus 30S Ribosomal Subunit
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:A
Chain Length:1522
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S2
Chain IDs:B
Chain Length:256
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S3
Chain IDs:C
Chain Length:239
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S4
Gene (Uniprot):rpsD
Chain IDs:D
Chain Length:208
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S5
Chain IDs:E
Chain Length:161
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S6
Chain IDs:F
Chain Length:101
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S7
Gene (Uniprot):rpsG
Chain IDs:G
Chain Length:155
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S8
Chain IDs:H
Chain Length:138
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S9
Chain IDs:I
Chain Length:128
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S10
Chain IDs:J
Chain Length:104
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S11
Chain IDs:K
Chain Length:129
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S12
Chain IDs:L
Chain Length:135
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S13
Chain IDs:M
Chain Length:126
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S14
Chain IDs:N
Chain Length:60
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S15
Chain IDs:O
Chain Length:88
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S16
Chain IDs:P
Chain Length:88
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S17
Chain IDs:Q
Chain Length:104
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S18
Chain IDs:R
Chain Length:88
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S19
Chain IDs:S
Chain Length:92
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN S20
Chain IDs:T
Chain Length:106
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:30S RIBOSOMAL PROTEIN THX
Chain IDs:U (auth: V)
Chain Length:26
Number of Molecules:1
Biological Source:Thermus thermophilus
Primary Citation

Abstact

Genetic information encoded in messenger RNA is translated into protein by the ribosome, which is a large nucleoprotein complex comprising two subunits, denoted 30S and 50S in bacteria. Here we report the crystal structure of the 30S subunit from Thermus thermophilus, refined to 3 A resolution. The final atomic model rationalizes over four decades of biochemical data on the ribosome, and provides a wealth of information about RNA and protein structure, protein-RNA interactions and ribosome assembly. It is also a structural basis for analysis of the functions of the 30S subunit, such as decoding, and for understanding the action of antibiotics. The structure will facilitate the interpretation in molecular terms of lower resolution structural data on several functional states of the ribosome from electron microscopy and crystallography.

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Primary Citation of related structures