1IW8 image
Deposition Date 2002-04-22
Release Date 2002-09-11
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1IW8
Keywords:
Title:
Crystal Structure of a mutant of acid phosphatase from Escherichia blattae (G74D/I153T)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:acid phosphatase
Gene (Uniprot):pho
Mutations:G74D, I153T
Chain IDs:A, B, C, D, E, F
Chain Length:231
Number of Molecules:6
Biological Source:Escherichia blattae
Ligand Molecules
Primary Citation
Enhancement of nucleoside phosphorylation activity in an acid phosphatase
PROTEIN ENG. 15 539 543 (2002)
PMID: 12200535 DOI: 10.1093/protein/15.7.539

Abstact

Escherichia blattae non-specific acid phosphatase (EB-NSAP) possesses a pyrophosphate-nucleoside phosphotransferase activity, which is C-5'-position selective. Current mutational and structural data were used to generate a mutant EB-NSAP for a potential industrial application as an effective and economical protein catalyst in synthesizing nucleotides from nucleosides. First, Gly74 and Ile153 were replaced by Asp and Thr, respectively, since the corresponding replacements in the homologous enzyme from Morganella morganii reduced the K(m) value for inosine and thus increased the productivity of 5'-IMP. We determined the crystal structure of G74D/I153T, which has a reduced K(m) value for inosine, as expected. The tertiary structure of G74D/I153T was virtually identical to that of the wild-type. In addition, neither of the introduced side chains of Asp74 and Thr153 is directly involved in the interaction with inosine in a hypothetical binding mode of inosine to EB-NSAP, although both residues are situated near a potential inosine-binding site. These findings suggested that a slight structural change caused by an amino acid replacement around the potential inosine-binding site could significantly reduce the K(m) value. Prompted by this hypothesis, we designed several mutations and introduced them to G74D/I153T, to decrease the K(m) value further. This strategy produced a S72F/G74D/I153T mutant with a 5.4-fold lower K(m) value and a 2.7-fold higher V(max) value as compared to the wild-type EB-NSAP.

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Primary Citation of related structures