1IV3 image
Deposition Date 2002-03-11
Release Date 2002-09-11
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1IV3
Keywords:
Title:
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.25
R-Value Work:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Gene (Uniprot):ispF
Mutations:L41M, L81M, L120M
Chain IDs:A, B, C, D, E, F
Chain Length:152
Number of Molecules:6
Biological Source:Thermus thermophilus
Ligand Molecules
Primary Citation
Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D 59 23 31 (2003)
PMID: 12499535 DOI: 10.1107/S0907444902017705

Abstact

Precursors for isoprenoid synthesis are essential in all organisms. These compounds are synthesized by one of two known routes: the well characterized mevalonate pathway or a recently discovered non-mevalonate route which is used in many bacteria and human pathogens. Since the second pathway is both vital and unlike any found in humans, enzymes catalysing reactions along this synthetic route are possible drug targets. The structure of one such enzyme from the thermophilic bacterium Thermus thermophilus has been solved to high resolution in the presence of substrate and with a substrate analogue. Enzyme co-crystallized with substrate shows only one product, cytosine monophosphate (CMP), in the active site. At the high resolution of the refinement (1.6 A) the positions and coordination of the magnesium ions in the active site are clearly seen.

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Primary Citation of related structures