1IOD image
Deposition Date 2001-02-27
Release Date 2001-06-27
Last Version Date 2024-04-03
Entry Detail
PDB ID:
1IOD
Title:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE COAGULATION FACTOR X BINDING PROTEIN FROM SNAKE VENOM AND THE GLA DOMAIN OF FACTOR X
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:COAGULATION FACTOR X BINDING PROTEIN
Chain IDs:A
Chain Length:129
Number of Molecules:1
Biological Source:Deinagkistrodon acutus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:COAGULATION FACTOR X BINDING PROTEIN
Chain IDs:B
Chain Length:123
Number of Molecules:1
Biological Source:Deinagkistrodon acutus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:COAGULATION FACTOR X GLA DOMAIN
Gene (Uniprot):F10
Chain IDs:C (auth: G)
Chain Length:44
Number of Molecules:1
Biological Source:Bos taurus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CGU C GLU GAMMA-CARBOXY-GLUTAMIC ACID
Ligand Molecules
Primary Citation
Crystal structure of an anticoagulant protein in complex with the Gla domain of factor X.
Proc.Natl.Acad.Sci.Usa 98 7230 7234 (2001)
PMID: 11404471 DOI: 10.1073/pnas.131179698

Abstact

The gamma-carboxyglutamic acid (Gla) domain of blood coagulation factors is responsible for Ca2+-dependent phospholipid membrane binding. Factor X-binding protein (X-bp), an anticoagulant protein from snake venom, specifically binds to the Gla domain of factor X. The crystal structure of X-bp in complex with the Gla domain peptide of factor X at 2.3-A resolution showed that the anticoagulation is based on the fact that two patches of the Gla domain essential for membrane binding are buried in the complex formation. The Gla domain thus is expected to be a new target of anticoagulant drugs, and X-bp provides a basis for designing them. This structure also provides a membrane-bound model of factor X.

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Primary Citation of related structures