1IM3 image
Deposition Date 2001-05-09
Release Date 2001-06-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1IM3
Title:
Crystal Structure of the human cytomegalovirus protein US2 bound to the MHC class I molecule HLA-A2/tax
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Human herpesvirus 5 (Taxon ID: 10359)
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN
Chain IDs:A, E, I, M
Chain Length:275
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, F, J, N
Chain Length:100
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Human T-cell lymphotropic virus type 1 Tax peptide
Chain IDs:C, G, K, O
Chain Length:9
Number of Molecules:4
Biological Source:
Polymer Type:polypeptide(L)
Molecule:cytomegalovirus protein US2
Gene (Uniprot):US2
Chain IDs:D, H, L, P
Chain Length:95
Number of Molecules:4
Biological Source:Human herpesvirus 5
Primary Citation
Antigen presentation subverted: Structure of the human cytomegalovirus protein US2 bound to the class I molecule HLA-A2.
Proc.Natl.Acad.Sci.USA 98 6794 6799 (2001)
PMID: 11391001 DOI: 10.1073/pnas.121172898

Abstact

Many persistent viruses have evolved the ability to subvert MHC class I antigen presentation. Indeed, human cytomegalovirus (HCMV) encodes at least four proteins that down-regulate cell-surface expression of class I. The HCMV unique short (US)2 glycoprotein binds newly synthesized class I molecules within the endoplasmic reticulum (ER) and subsequently targets them for proteasomal degradation. We report the crystal structure of US2 bound to the HLA-A2/Tax peptide complex. US2 associates with HLA-A2 at the junction of the peptide-binding region and the alpha3 domain, a novel binding surface on class I that allows US2 to bind independently of peptide sequence. Mutation of class I heavy chains confirms the importance of this binding site in vivo. Available data on class I-ER chaperone interactions indicate that chaperones would not impede US2 binding. Unexpectedly, the US2 ER-luminal domain forms an Ig-like fold. A US2 structure-based sequence alignment reveals that seven HCMV proteins, at least three of which function in immune evasion, share the same fold as US2. The structure allows design of further experiments to determine how US2 targets class I molecules for degradation.

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