1IBW image
Deposition Date 2001-03-29
Release Date 2002-03-13
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1IBW
Keywords:
Title:
STRUCTURE OF THE D53,54N MUTANT OF HISTIDINE DECARBOXYLASE BOUND WITH HISTIDINE METHYL ESTER AT 25 C
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HISTIDINE DECARBOXYLASE BETA CHAIN
Gene (Uniprot):hdcA
Mutations:D53N, D54N
Chain IDs:A, C, E
Chain Length:81
Number of Molecules:3
Biological Source:Lactobacillus sp. 30A
Polymer Type:polypeptide(L)
Molecule:Histidine decarboxylase alpha chain
Gene (Uniprot):hdcA
Chain IDs:B, D, F
Chain Length:229
Number of Molecules:3
Biological Source:Lactobacillus sp. 30A
Ligand Molecules
Primary Citation
Structure and cooperativity of a T-state mutant of histidine decarboxylase from Lactobacillus 30a.
Proteins 46 321 329 (2002)
PMID: 11835507 DOI: 10.1002/prot.10042

Abstact

Histidine decarboxylase (HDC) from Lactobacillus 30a converts histidine to histamine, a process that enables the bacteria to maintain the optimum pH range for cell growth. HDC is regulated by pH; it is active at low pH and inactive at neutral to alkaline pH. The X-ray structure of HDC at pH 8 revealed that a helix was disordered, resulting in the disruption of the substrate-binding site. The HDC trimer has also been shown to exhibit cooperative kinetics at neutral pH, that is, histidine can trigger a T-state to R-state transition. The D53,54N mutant of HDC has an elevated Km, even at low pH, indicating that the enzyme assumes the low activity T-state. We have solved the structures of the D53,54N mutant at low pH, with and without the substrate analog histidine methyl ester (HME) bound. Structural analysis shows that the apo-D53,54N mutant is in the inactive or T-state and that binding of the substrate analog induces the enzyme to adopt the active or R-state. A mechanism for the cooperative transition is proposed.

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Primary Citation of related structures