1I0V image
Deposition Date 2001-01-30
Release Date 2001-02-14
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1I0V
Keywords:
Title:
Ribonuclease T1 in complex with 2'GMP (form I crystal)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.23 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GUANYL-SPECIFIC RIBONUCLEASE T1
Gene (Uniprot):rntA
Mutations:Q25K
Chain IDs:A
Chain Length:104
Number of Molecules:1
Biological Source:Aspergillus oryzae
Primary Citation
The contribution of metal ions to the conformational stability of ribonuclease T1: crystal versus solution.
Eur.J.Biochem. 268 3993 4000 (2001)
PMID: 11453993 DOI: 10.1046/j.1432-1327.2001.02310.x

Abstact

In the crystalline state, ribonuclease T1 binds calcium ions at different lattice-dependent positions. In solution, its conformational stability is also remarkably increased in the presence of divalent metal ions. Combining urea unfolding studies and X-ray crystallography, we compared the presence of several metal ions at specific sites in the protein to their contribution to the overall stabilizing effect in solution. We constructed thermodynamic cycles involving particular metal ions and specific carboxylate functions. The resulting coupling energies indicate that some (but not all) metal ions found at lattice contacts in crystal structures may indeed significantly contribute to stability enhancement in the presence of metal ions in solution.

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Primary Citation of related structures