1HM4 image
Entry Detail
PDB ID:
1HM4
Keywords:
Title:
N219L PENTALENENE SYNTHASE
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2000-12-04
Release Date:
2002-08-30
Method Details:
Experimental Method:
Resolution:
3.47 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PENTALENENE SYNTHASE
Mutations:N219L
Chain IDs:A, B
Chain Length:336
Number of Molecules:2
Biological Source:Streptomyces sp.
Ligand Molecules
Primary Citation
Pentalenene synthase. Analysis of active site residues by site-directed mutagenesis.
J.Am.Chem.Soc. 124 7681 7689 (2002)
PMID: 12083921 DOI: 10.1021/ja026058q

Abstact

Incubation of farnesyl diphosphate (1) with the W308F or W308F/H309F mutants of pentalenene synthase, an enzyme from Streptomyces UC5319, yielded pentalenene (2), accompanied by varying proportions of (+)-germacrene A (7) with relatively minor changes in k(cat) and k(cat)/K(m). By contrast, single H309 mutants gave rise to both (+)-germacrene A (7) and protoilludene (8) in addition to pentalenene (2). Mutation to glutamate of each of the three aspartate residues in the Mg(2+)-binding aspartate-rich domain, (80)DDLFD, resulted in reduction in the k(cat)/K(m) for farnesyl diphosphate and formation of varying proportions of pentalenene and (+)-germacrene A (7). Formation of (+)-germacrene A (7) by the various pentalenene synthase mutants is the result of a derailment of the natural anti-Markovnikov cyclization reaction, and not simply the consequence of trapping of a normally cryptic, carbocationic intermediate. Both the N219A and N219L mutants of pentalenene synthase were completely inactive, while the corresponding N219D mutant had a k(cat)/K(m) which was 3300-fold lower than that of the wild-type synthase, and produced a mixture of pentalenene (2) (91%) and the aberrant cyclization product beta-caryophyllene (9) (9%). Finally, the F77Y mutant had a k(cat)/K(m) which was reduced by 20-fold compared to that of the wild-type synthase.

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