1HK8 image
Deposition Date 2003-03-06
Release Date 2003-03-27
Last Version Date 2023-12-13
Entry Detail
PDB ID:
1HK8
Keywords:
Title:
STRUCTURAL BASIS FOR ALLOSTERIC SUBSTRATE SPECIFICITY REGULATION IN CLASS III RIBONUCLEOTIDE REDUCTASES: NRDD IN COMPLEX WITH DGTP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE
Gene (Uniprot):nrdD
Mutations:YES
Chain IDs:A
Chain Length:605
Number of Molecules:1
Biological Source:BACTERIOPHAGE T4
Primary Citation
A Metal-Binding Site in the Catalytic Subunit of Anaerobic Ribonucleotide Reductase.
Proc.Natl.Acad.Sci.USA 100 3826 ? (2003)
PMID: 12655046 DOI: 10.1073/PNAS.0736456100

Abstact

A Zn(Cys)(4) center has been found in the C-terminal region of the crystal structure of the anaerobic class III ribonucleotide reductase (RNR) from bacteriophage T4. The metal center is structurally related to the zinc ribbon motif and to rubredoxin and rubrerythrin. Mutant enzymes of the homologous RNR from Escherichia coli, in which the coordinating cysteines, conserved in almost all known class III RNR sequences, have been mutated into alanines, are shown to be inactive as the result of their inability to generate the catalytically essential glycyl radical. The possible roles of the metal center are discussed in relationship to the currently proposed reaction mechanism for generation of the glycyl radical in class III RNRs.

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Primary Citation of related structures