1H8P image
Deposition Date 2001-02-14
Release Date 2002-04-12
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1H8P
Title:
Bull seminal plasma PDC-109 fibronectin type II module
Biological Source:
Source Organism:
BOS TAURUS (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
1.82 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 3 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SEMINAL PLASMA PROTEIN PDC-109
Chain IDs:A, B
Chain Length:109
Number of Molecules:2
Biological Source:BOS TAURUS
Ligand Molecules
Primary Citation
Sperm Coating Mechanism from the 1.8 A Crystal Structure of Pdc-109-Phosphorylcholine Complex
Structure 10 505 ? (2002)
PMID: 11937055 DOI: 10.1016/S0969-2126(02)00751-7

Abstact

Bovine seminal plasma PDC-109 binds to sperm surface choline lipids and promotes sperm capacitation by stimulating the efflux of cholesterol and phospholipids. The structure of PDC-109 with bound phosphorylcholine was solved using MAD data of a single platinum site. Its two globular (40 x 50 x 20 A(3)) Fn2 domains are linked and clustered by a short polypeptide. The choline binding sites lie at the same face of the molecule. Phosphorylcholine binds to the Fn2 domains through a cation-pi interaction between the quaternary ammonium group and a core tryptophan, plus hydrogen bonding between hydroxyls of exposed tyrosines and the phosphate group. The structure of the PDC-109-oPC complex provides a structural ground for the sperm membrane-coating mechanism underlying PDC-109-induced capacitation.

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Primary Citation of related structures