1GQZ image
Deposition Date 2001-12-07
Release Date 2003-06-12
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1GQZ
Keywords:
Title:
Refinement of Haemophilus influenzae Diaminopimelate epimerase at 1.7A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DIAMINOPIMELATE EPIMERASE
Gene (Uniprot):dapF
Chain IDs:A
Chain Length:274
Number of Molecules:1
Biological Source:HAEMOPHILUS INFLUENZAE
Primary Citation
Refinement of Haemophilus influenzae diaminopimelic acid epimerase (DapF) at 1.75 A resolution suggests a mechanism for stereocontrol during catalysis.
Acta Crystallogr. D Biol. Crystallogr. 60 397 400 (2004)
PMID: 14747737 DOI: 10.1107/S0907444903027999

Abstact

Diaminopimelate (DAP) epimerase (DapF) is central to the biosynthesis of both lysine and cell-wall peptidoglycan in many bacteria species. The peptidoglycan layer provides great potential for the development of novel antimicrobials as it is a uniquely prokaryotic feature. Crystals of recombinant Haemophilus influenzae DapF that diffract to beyond 2 A resolution have been obtained which facilitated the solution of the structure by molecular replacement at a resolution approximately 1 A higher than that previously determined. An analysis of the structure (i) in comparison to other PLP-independent racemaces and (ii) in relation to the catalytic mechanism and stereospecificity of DapF is presented.

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Primary Citation of related structures