1GH6 image
Deposition Date 2000-11-15
Release Date 2001-11-15
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1GH6
Title:
RETINOBLASTOMA POCKET COMPLEXED WITH SV40 LARGE T ANTIGEN
Biological Source:
Source Organism:
Simian virus 40 (Taxon ID: 1891767)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.31
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 4
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large T antigen
Chain IDs:A
Chain Length:114
Number of Molecules:1
Biological Source:Simian virus 40
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Retinoblastoma-associated protein
Gene (Uniprot):RB1
Chain IDs:B
Chain Length:333
Number of Molecules:1
Biological Source: Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for the inactivation of retinoblastoma tumor suppressor by SV40 large T antigen.
EMBO J. 20 295 304 (2001)
PMID: 11226179 DOI: 10.1093/emboj/20.1.295

Abstact

Inactivation of the retinoblastoma (Rb) tumor suppressor by Simian virus 40 (SV40) large T antigen is one of the central features of tumorigenesis induced by SV40. Both the N-terminal J domain and the LxCxE motif of large T antigen are required for inactivation of Rb. The crystal structure of the N-terminal region (residues 7-117) of SV40 large T antigen bound to the pocket domain of Rb reveals that large T antigen contains a four-helix bundle, and residues from helices alpha2 and alpha4 and from a loop containing the LxCxE motif participate in the interactions with Rb. The two central helices and a connecting loop in large T antigen have structural similarities with the J domains of the molecular chaperones DnaJ and HDJ-1, suggesting that large T antigen may use a chaperone mechanism for its biological function. However, there are significant differences between large T antigen and the molecular chaperones in other regions and these differences are likely to provide the specificity needed for large T antigen to inactivate Rb.

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Primary Citation of related structures