1GD9 image
Deposition Date 2000-09-22
Release Date 2001-09-22
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1GD9
Keywords:
Title:
CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ASPARTATE AMINOTRANSFERASE
Gene (Uniprot):PH1371
Chain IDs:A, B
Chain Length:389
Number of Molecules:2
Biological Source:Pyrococcus horikoshii
Ligand Molecules
Primary Citation
Temperature dependence of the enzyme-substrate recognition mechanism.
J.Biochem. 129 173 178 (2001)
PMID: 11134972 DOI: 10.1093/oxfordjournals.jbchem.a002829

Abstact

We determined the crystal structure of the liganded form of alpha-aminotransferase from a hyperthermophile, Pyrococcus horikoshii. This hyperthermophilic enzyme did not show domain movement upon binding of an acidic substrate, glutamate, except for a small movement of the alpha-helix from Glu16 to Ala25. The omega-carboxyl group of the acidic substrate was recognized by Tyr70* without its side-chain movement, but not by positively charged Arg or Lys. Compared with the homologous enzymes from Thermus thermophilus HB8 and Escherichia coli, it was suggested that the more thermophilic the enzyme is, the smaller the domain movement is. This rule seems to be applicable to many other enzymes already reported.

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Primary Citation of related structures