1G0D image
Deposition Date 2000-10-06
Release Date 2001-05-23
Last Version Date 2024-03-13
Entry Detail
PDB ID:
1G0D
Keywords:
Title:
CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE
Biological Source:
Source Organism:
Pagrus major (Taxon ID: 143350)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Gene (Uniprot):tgm2
Chain IDs:A
Chain Length:695
Number of Molecules:1
Biological Source:Pagrus major
Ligand Molecules
Primary Citation
Crystal structure of red sea bream transglutaminase.
J.Biol.Chem. 276 12055 12059 (2001)
PMID: 11080504 DOI: 10.1074/jbc.M009862200

Abstact

The crystal structure of the tissue-type transglutaminase from red sea bream liver (fish-derived transglutaminase, FTG) has been determined at 2.5-A resolution using the molecular replacement method, based on the crystal structure of human blood coagulation factor XIII, which is a transglutaminase zymogen. The model contains 666 residues of a total of 695 residues, 382 water molecules, and 1 sulfate ion. FTG consists of four domains, and its overall and active site structures are similar to those of human factor XIII. However, significant structural differences are observed in both the acyl donor and acyl acceptor binding sites, which account for the difference in substrate preferences. The active site of the enzyme is inaccessible to the solvent, because the catalytic Cys-272 hydrogen-bonds to Tyr-515, which is thought to be displaced upon acyl donor binding to FTG. It is postulated that the binding of an inappropriate substrate to FTG would lead to inactivation of the enzyme because of the formation of a new disulfide bridge between Cys-272 and the adjacent Cys-333 immediately after the displacement of Tyr-515. Considering the mutational studies previously reported on the tissue-type transglutaminases, we propose that Cys-333 and Tyr-515 are important in strictly controlling the enzymatic activity of FTG.

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Primary Citation of related structures
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