1FYT image
Deposition Date 2000-10-03
Release Date 2000-11-08
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1FYT
Keywords:
Title:
CRYSTAL STRUCTURE OF A COMPLEX OF A HUMAN ALPHA/BETA-T CELL RECEPTOR, INFLUENZA HA ANTIGEN PEPTIDE, AND MHC CLASS II MOLECULE, HLA-DR1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
H3N2 subtype (Taxon ID: 119210)
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN
Gene (Uniprot):HLA-DRA
Chain IDs:A
Chain Length:181
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN
Chain IDs:B
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HEMAGGLUTININ HA1 PEPTIDE CHAIN
Gene (Uniprot):HA
Chain IDs:C
Chain Length:13
Number of Molecules:1
Biological Source:H3N2 subtype
Polymer Type:polypeptide(L)
Molecule:T-CELL RECEPTOR ALPHA CHAIN
Chain IDs:D
Chain Length:212
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:T-CELL RECEPTOR BETA CHAIN
Gene (Uniprot):TRBC1
Mutations:C192S
Chain IDs:E
Chain Length:245
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structure of a covalently stabilized complex of a human alphabeta T-cell receptor, influenza HA peptide and MHC class II molecule, HLA-DR1.
EMBO J. 19 5611 5624 (2000)
PMID: 11060013 DOI: 10.1093/emboj/19.21.5611

Abstact

An alphabeta T-cell receptor (alphabetaTCR)/hemagglutinin (HA) peptide/human leukocyte antigen (HLA)-DR1 complex was stabilized by flexibly linking the HA peptide with the human HA1.7 alphabetaTCR, to increase the local concentration of the interacting proteins once the peptide has been loaded onto the major histocompatibility complex (MHC) molecule. The structure of the complex, determined by X-ray crystallography, has a binding mode similar to that of the human B7 alphabetaTCR on a pMHCI molecule. Twelve of the 15 MHC residues contacted are at the same positions observed earlier in class I MHC/peptide/TCR complexes. One contact, to an MHC loop outside the peptide-binding site, is conserved and specific to pMHCII complexes. TCR gene usage in the response to HA/HLA-DR appears to conserve charged interactions between three lysines of the peptide and acidic residues on the TCR.

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Primary Citation of related structures