1FUL image
Deposition Date 2000-09-15
Release Date 2001-05-16
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1FUL
Keywords:
Title:
SOLUTION STRUCTURE OF AN RGD PEPTIDE ISOMER-B
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
19
Selection Criteria:
back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RGD PEPTIDE ISOMER-B
Chain IDs:A
Chain Length:11
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Solution structures and integrin binding activities of an RGD peptide with two isomers.
Biochemistry 40 2373 2378 (2001)
PMID: 11327857 DOI: 10.1021/bi002101f

Abstact

The Arg-Gly-Asp (RGD) sequence serves as the primary integrin recognition site in extracellular matrix proteins, and peptides containing this sequence can mimic the activities of the matrix proteins. Depending on the context of the RGD sequence, an RGD-containing peptide may bind to all of the RGD-directed integrins, to a few, or to only a single one. We have previously isolated from a phage-displayed peptide library a cyclic peptide that binds avidly to the alpha(v)beta3 and alpha(v)beta5 integrins but does not bind to other closely related integrins. This peptide, ACDCRGDCFCG, exists in two natural configurations depending on internal disulfide bonding. The peptide with the 1-4; 2-3 disulfide bond arrangement accounts for most of the alpha(v) integrin binding activity, whereas the 1-3; 2-4 peptide is about 10-fold less potent. Solution structure analysis by nuclear magnetic resonance reveals an entirely different presentation of the RGD motif in the two isomers of RGD-4C. These results provide new insight into the ligand recognition specificity of integrins.

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Primary Citation of related structures